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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8111117_8111843_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8111117 - 8111843
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTTAATG
Flanking Amino Acid:
IFLIQMFIMPKTAKLGISFG
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77.1
0.61
0.8
76.7
32
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
67.9
0.42
1.8
74.65
38.4

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014536
8099053 - 8139830
40778
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787