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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8112800_8113594_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8112800 - 8113594
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGCAGT
5'SS Class:
major
3'SS Sequence:
TCTTTGTATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTTCTTGTAACA
Flanking Amino Acid:
MSTIEGLSSTNPWCSKSDDF
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.1
42.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.5
0.62
0.9
73.7
36
Minor 5ss
48.9
-0.1
2.6
66.1
39.4
Minor BPS
52
0.06
2
67.58
39.4

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014536
8099053 - 8139830
40778
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787