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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8116369_8119890_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8116369 - 8119890
Intron Length:
3522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
CTTTCATTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
ANRMESAGVPGRVHITEATL
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
68.6
36.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83
0.74
0.8
80.9
29.8
Minor 5ss
28.9
-2.4
2.7
28.2
35.6
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014536
8099053 - 8139830
40778
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787