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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8124713_8125507_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8124713 - 8125507
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTAAA
U12 Branch Point Sequence:
CTGTAGGTAAAT
Flanking Amino Acid:
QADKRSLLFQVLANAVIFLC
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
51.3
0.03
1.3
53.4
40.4
Major PPT
83.9
0.76
0.8
80.1
31.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
40
-0.6
2.6
61.61
47.8

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787
ENSAPLT00000014536
8099053 - 8139830
40778