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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8129691_8139681_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8129691 - 8139681
Intron Length:
9991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CCTAACTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
80
0.75
1
78.6
31
Major PPT
89.3
0.88
0.7
84.3
30.8
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
59.5
0.29
1.6
64.77
41.9

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014536
8099053 - 8139830
40778
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787