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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8175164_8175270_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8175164 - 8175270
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGGTAT
U12 Branch Point Sequence:
TCCTGGTTTACA
Flanking Amino Acid:
AKYYPNNETESILGRIIRVT
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
39.5
-0.6
1.5
28.8
44.9
Major PPT
78.2
0.64
0.9
71.1
38.6
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
43.6
-0.5
2.6
58.55
47.1

Associated Gene:

Gene:
TENT4B
Ensembl Gene ID:
ENSAPLG00000014941
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015589
8170805 - 8205927
35123