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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8175398_8176281_R

Intron Information:

Intron Rank:
7
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
8175398 - 8176281
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTCG
5'SS Class:
weak_minor
3'SS Sequence:
TTTTTATTTTAAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
MLYIEDPLQPGNDVGRSSYG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
55.9
43.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
1
87.8
28.8
Minor 5ss
70.3
0.68
1.7
74.3
42
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
TENT4B
Ensembl Gene ID:
ENSAPLG00000014941
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015589
8170805 - 8205927
35123