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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8177941_8180480_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8177941 - 8180480
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGGCAA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CAGTCCTAAAGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.2
67
39.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
93
0.97
0.6
91.8
19.1
Minor 5ss
26.4
-2.7
2.9
30.1
42.9
Minor BPS
49.7
-0
2
58.84
46.2

Associated Gene:

Gene:
TENT4B
Ensembl Gene ID:
ENSAPLG00000014941
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015589
8170805 - 8205927
35123