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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8189343_8205805_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
8189343 - 8205805
Intron Length:
16463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCTGACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
69.4
0.69
1.7
88.83
36.2

Associated Gene:

Gene:
TENT4B
Ensembl Gene ID:
ENSAPLG00000014941
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015589
8170805 - 8205927
35123