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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8211017_8212437_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8211017 - 8212437
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTATCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GAAGATCTAATT
Flanking Amino Acid:
MNSLEQAEDLKAFERRLT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.2
0.52
0.9
70
36.2
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
44.1
-0.3
1.8
56.54
39.7

Associated Gene:

Gene:
CNEP1R1
Ensembl Gene ID:
ENSAPLG00000025705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047864
8210973 - 8215439
4467