Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8231192_8232214_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8231192 - 8232214

Intron Length:

1023

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCGTCT

5'SS Class:

weak_major

3'SS Sequence:

TTCCCCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TATTGCTAAACC

Flanking Amino Acid:

AFLNNLIPKKILEKTAFPNS

Intron Amino Acid Position:

316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.2

65.7

40.6

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

77.1

0.61

0.7

69.1

31.4

Minor 5ss

53.6

0.12

2.8

74.3

Minor BPS

60.6

0.31

2.1

75.39

41.1

Associated Gene:

Gene:

HEATR3

Ensembl Gene ID:

ENSAPLG00000009802

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010267

8225237 - 8241232

15996