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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8253920_8258926_F

Intron Information:

Intron Rank:
146823
Intron Class:
major
Intron Phase:
Intron Coordinates:
8253920 - 8258926
Intron Length:
5007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
CACTTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.3
74.1
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.7
0.49
1
64.5
41.1
Minor 5ss
40.1
-1.1
2.8
47.8
41.5
Minor BPS
74.2
0.84
1.7
88.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029092
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034459
8251679 - 8259106
7428