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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8260693_8264617_F

Intron Information:

Intron Rank:
140459
Intron Class:
major
Intron Phase:
Intron Coordinates:
8260693 - 8264617
Intron Length:
3925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.9
0.76
0.8
79.4
32.3
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
63.3
0.5
1.6
78.42
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025588
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017480
8260512 - 8278840
18329