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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8264725_8275463_F

Intron Information:

Intron Rank:
140460
Intron Class:
major
Intron Phase:
Intron Coordinates:
8264725 - 8275463
Intron Length:
10739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTCCCTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TCCCTTTTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
72.9
0.52
1
74
28.3
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
47.4
-0.3
1.5
47.78
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025588
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017480
8260512 - 8278840
18329