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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8264725_8286356_F

Intron Information:

Intron Rank:
140461
Intron Class:
major
Intron Phase:
Intron Coordinates:
8264725 - 8286356
Intron Length:
21632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCGAA
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
42.7
-0.4
1.4
35.9
43
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025588
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019643
8264351 - 8286668
22318