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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8321670_8323926_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8321670 - 8323926
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGCGC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
GTTTCAGCAATC
Flanking Amino Acid:
RGRLAGSLPGVEEGESSDFA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
55
44.1
Major BPS
59.7
0.24
1
67
29.8
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
24.6
-2.9
3.2
32.9
42.2
Minor BPS
46
-0.3
2.3
64.75
40.8

Associated Gene:

Gene:
ZNF423
Ensembl Gene ID:
ENSAPLG00000009508
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035944
8321624 - 8505722
184099