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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8323987_8346197_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8323987 - 8346197
Intron Length:
22211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GACCTCTAAACC
Flanking Amino Acid:
LNWDSSVTQSGGLGGELESE
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
73
0.57
1
73.6
28.6
Major PPT
72.2
0.5
1.1
68.8
41.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
50.4
-0
1.7
57.28
41.2

Associated Gene:

Gene:
ZNF423
Ensembl Gene ID:
ENSAPLG00000009508
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017654
8323866 - 8505722
181857
ENSAPLT00000009919
8323866 - 8505722
181857
ENSAPLT00000035944
8321624 - 8505722
184099