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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8420808_8483786_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8420808 - 8483786
Intron Length:
62979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTGAACCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTGTCACTAACA
Flanking Amino Acid:
IQIHVANHMIEEGINHECKL
Intron Amino Acid Position:
1211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.9
0.54
1
66.4
40.2
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
55.8
0.18
2
70.56
41

Associated Gene:

Gene:
ZNF423
Ensembl Gene ID:
ENSAPLG00000009508
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017654
8323866 - 8505722
181857
ENSAPLT00000009919
8323866 - 8505722
181857
ENSAPLT00000035944
8321624 - 8505722
184099