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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_84449_85040_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84449 - 85040
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTGTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTTGTAACT
Flanking Amino Acid:
QYETSALLLQHGASVNLSNA
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.9
0.7
0.9
73.4
41.9
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
62.2
0.46
2
82.56
39.6

Associated Gene:

Gene:
ANKRD27
Ensembl Gene ID:
ENSAPLG00000011807
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040364
49996 - 88364
38369
ENSAPLT00000033866
49668 - 88364
38697
ENSAPLT00000012393
53478 - 88364
34887