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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8485352_8505692_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8485352 - 8505692
Intron Length:
20341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TGCCCCTTATGC
Flanking Amino Acid:
QKFFFQTELQNHTLSQHAQ*
Intron Amino Acid Position:
1294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
84.8
0.78
0.8
76.7
37.5
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
49.5
-0
1.9
60.42
44.6

Associated Gene:

Gene:
ZNF423
Ensembl Gene ID:
ENSAPLG00000009508
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035944
8321624 - 8505722
184099
ENSAPLT00000017654
8323866 - 8505722
181857
ENSAPLT00000009919
8323866 - 8505722
181857