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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8538755_8559307_F

Intron Information:

Intron Rank:
124091
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8538755 - 8559307
Intron Length:
20553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTCATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTACTGTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
62.3
44.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
54.4
0.15
2.1
67.3
43.8
Minor BPS
52.1
0.06
2.1
65.02
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016894
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018852
8538623 - 8598874
60252