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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8559400_8568781_F

Intron Information:

Intron Rank:
124092
Intron Class:
major
Intron Phase:
Intron Coordinates:
8559400 - 8568781
Intron Length:
9382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
71.3
0.53
1
61.3
37
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016894
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018852
8538623 - 8598874
60252