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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8568920_8598491_F

Intron Information:

Intron Rank:
124093
Intron Class:
major
Intron Phase:
Intron Coordinates:
8568920 - 8598491
Intron Length:
29572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGCCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
60.2
0.4
1.7
73.02
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016894
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018852
8538623 - 8598874
60252