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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8568920_8605710_F

Intron Information:

Intron Rank:
124095
Intron Class:
major
Intron Phase:
Intron Coordinates:
8568920 - 8605710
Intron Length:
36791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTATTTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.6
0.75
0.9
82
34.8
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
48.8
-0
1.9
69.9
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016894
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036613
8566257 - 8613827
47571