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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8601021_8602300_F

Intron Information:

Intron Rank:
127050
Intron Class:
major
Intron Phase:
Intron Coordinates:
8601021 - 8602300
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
CCGCTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CCGCTCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
61.7
0.26
1
57.1
37.5
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
52.2
0.07
1.5
56.88
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018483
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035881
8601019 - 8605069
4051