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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8602443_8604897_F

Intron Information:

Intron Rank:
127051
Intron Class:
major
Intron Phase:
Intron Coordinates:
8602443 - 8604897
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
TTTCTCCACAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TGTTTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
63.1
43.7
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
66.7
0.38
1
68
31.5
Minor 5ss
44.1
-0.6
3.3
61.8
44.9
Minor BPS
55.3
0.16
2
72
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018483
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035881
8601019 - 8605069
4051