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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8711520_8711720_F

Intron Information:

Intron Rank:
145930
Intron Class:
major
Intron Phase:
Intron Coordinates:
8711520 - 8711720
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACCGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CATTTCTTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.6
0.46
0.9
67.6
34
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
56.5
0.07
1.7
59.43
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028619
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024468
8711107 - 8712156
1050