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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8745965_8746209_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8745965 - 8746209
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
ATGGCGTTCACC
Flanking Amino Acid:
YHLYIKTPRKMFRHTDSLFP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
73.4
0.53
0.9
65.1
41.2
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
45.6
-0.3
2.5
59.98
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027161
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034559
8728674 - 8746272
17599