About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8758490_8760596_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8758490 - 8760596
Intron Length:
2107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TTCTCCTCCTCT
Flanking Amino Acid:
KRKVAALEIEKLVREFVAQN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
60.3
39.3
Major BPS
62.4
0.31
1
64
32.1
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
33
-1.9
3.4
41
39.9
Minor BPS
41.7
-0.5
3.7
75.91
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027305
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040043
8754980 - 8760700
5721