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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8831651_8834608_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8831651 - 8834608
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTTG
5'SS Class:
major
3'SS Sequence:
CCTGTGGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCTCTCTCCCT
Flanking Amino Acid:
TQEEEDQHKMRLCGRLQQQE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
70.9
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
65.2
0.34
1
60.9
40.2
Minor 5ss
38.8
-1.3
3
49.5
46.8
Minor BPS
38.5
-0.8
3.6
71.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007065
8814998 - 8857070
42073