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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8840855_8847288_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8840855 - 8847288
Intron Length:
6434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTTTGCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTCCCTGATGT
Flanking Amino Acid:
REARYHISTQSPFSVDPSIG
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.5
0.69
0.9
73.9
35.4
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
48.7
-0
2
71.48
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007065
8814998 - 8857070
42073