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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8851740_8853009_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8851740 - 8853009
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATAGCTTCACGT
Flanking Amino Acid:
VPLVLRNNDMVPRLVKVVLE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.4
0.75
0.8
77.6
31.1
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
42.7
-0.4
2
58.83
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007065
8814998 - 8857070
42073