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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8853130_8854256_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8853130 - 8854256
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTGCACCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATGCCTTGCACC
Flanking Amino Acid:
LDMSETSHQKFSAVDLDQSL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
69.7
43.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
73.5
0.53
0.9
63
38.6
Minor 5ss
63.8
0.47
2.8
81.8
38.5
Minor BPS
47.3
-0.2
1.9
58.96
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007065
8814998 - 8857070
42073