About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8903170_8905804_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8903170 - 8905804
Intron Length:
2635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCACA
5'SS Class:
major
3'SS Sequence:
TTGGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGGTCTTCACCC
Flanking Amino Acid:
RTSPTSHGAQVTFPIRVFSL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.7
42.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77
0.61
0.9
70.4
36.3
Minor 5ss
34.6
-1.7
2.9
41.4
44.7
Minor BPS
50.7
0
1.8
63.03
42.7

Associated Gene:

Gene:
PNP
Ensembl Gene ID:
ENSAPLG00000006820
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007069
8902900 - 8909200
6301