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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8905981_8907532_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8905981 - 8907532
Intron Length:
1552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GTGATGCCAGCC
Flanking Amino Acid:
QNPLHGPNDERLGVRFPCMS
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
76.3
0.59
0.8
69.4
31.3
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
32.4
-1.3
2.2
40.53
38.8

Associated Gene:

Gene:
PNP
Ensembl Gene ID:
ENSAPLG00000006820
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007069
8902900 - 8909200
6301