About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8944401_8945110_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8944401 - 8945110
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GAATGTTCAAAT
Flanking Amino Acid:
GKSSGKDFHQTQFLIQECAS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
45.5
-0.2
2
60.65
42.4

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039455
8939719 - 8992037
52319
ENSAPLT00000021365
8934191 - 8991694
57504
ENSAPLT00000007513
8939719 - 8991694
51976