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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8945800_8945897_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8945800 - 8945897
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GTCCCCTTACTG
Flanking Amino Acid:
KVIKLSKVQEVIFGLALLNS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
54
-0
1.7
57.31
44.5

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021365
8934191 - 8991694
57504
ENSAPLT00000007513
8939719 - 8991694
51976
ENSAPLT00000039455
8939719 - 8992037
52319