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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8946582_8948028_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8946582 - 8948028
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTCCTCTTGCCC
Flanking Amino Acid:
IDAFLKTLRRDFPQERCPVV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75.7
0.58
0.8
72.9
32
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
44
-0.4
3.4
66.45
39.7

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021365
8934191 - 8991694
57504
ENSAPLT00000007513
8939719 - 8991694
51976
ENSAPLT00000039455
8939719 - 8992037
52319