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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8950355_8950628_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8950355 - 8950628
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGTATTTGACT
Flanking Amino Acid:
SGLTDGIPLQSISAPGSGIW
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
63.6
0.51
1.5
76.74
39.9

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021365
8934191 - 8991694
57504
ENSAPLT00000007513
8939719 - 8991694
51976
ENSAPLT00000039455
8939719 - 8992037
52319