Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8955722_8956561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8955722 - 8956561

Intron Length:

840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTCTTCTGATTT

Flanking Amino Acid:

RILDVAQDLKALSMLLNGTP

Intron Amino Acid Position:

569

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

92.8

0.96

0.5

93.3

15.6

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

51.2

0.12

1.7

68.88

42.5

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000039455

8939719 - 8992037

52319