Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8961760_8963108_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8961760 - 8963108

Intron Length:

1349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTAGAT

5'SS Class:

major

3'SS Sequence:

TTTTTTCATTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CCTTTTTTCATT

Flanking Amino Acid:

SSLDAISPVQIDSLAGMASL

Intron Amino Acid Position:

671

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

67.9

37.3

Major BPS

100

1.24

0.5

100

Major PPT

90.1

0.9

0.7

89.7

25.6

Minor 5ss

30.8

-2.2

3.7

46.7

48.7

Minor BPS

54.5

0.22

1.7

69.97

42.5

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976