Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8966076_8967494_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8966076 - 8967494

Intron Length:

1419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATTAT

U12 Branch Point Sequence:

TTATTTCTGACA

Flanking Amino Acid:

GIAALDRFKNRLKDYPQYCQ

Intron Amino Acid Position:

924

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

90.4

20.6

Major BPS

0.42

1.3

60.1

46.3

Major PPT

79.5

0.66

76.7

37.3

Minor 5ss

33.2

-1.9

3.4

48.7

47.5

Minor BPS

57.4

0.23

1.6

71.13

34.6

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007513

8939719 - 8991694

51976

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504