Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8982096_8982824_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8982096 - 8982824

Intron Length:

729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGATTG

5'SS Class:

major

3'SS Sequence:

TCTGTTGCATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

AGAATTCTAACC

Flanking Amino Acid:

NAHSRGNAPEGLPQLMEVVR

Intron Amino Acid Position:

1765

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

68.5

39.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

67.5

0.39

39.3

Minor 5ss

35.7

-1.6

3.1

39.1

46.1

Minor BPS

-0.1

1.6

55.74

35.7

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976