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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8983057_8985119_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8983057 - 8985119
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTTCCCTGATA
Flanking Amino Acid:
TKAFSAFVGQMHQQGILKTD
Intron Amino Acid Position:
1843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.7
44.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72.6
0.51
0.9
69.2
31.5
Minor 5ss
34.6
-1.7
3.8
55.3
48.9
Minor BPS
64.2
0.44
1.7
75
36.6

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007513
8939719 - 8991694
51976
ENSAPLT00000039455
8939719 - 8992037
52319
ENSAPLT00000021365
8934191 - 8991694
57504