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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8986204_8986482_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8986204 - 8986482
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTGCTCTAACT
Flanking Amino Acid:
TINFQTLTAFCNTFHILRPT
Intron Amino Acid Position:
1980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
83.7
34.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.4
0.84
0.7
85.1
28.9
Minor 5ss
40.7
-1
3.1
56.6
42.9
Minor BPS
55.2
0.24
1.8
71.75
45.6

Associated Gene:

Gene:
CNOT1
Ensembl Gene ID:
ENSAPLG00000007162
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039455
8939719 - 8992037
52319
ENSAPLT00000021365
8934191 - 8991694
57504
ENSAPLT00000007513
8939719 - 8991694
51976