Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8986601_8987073_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8986601 - 8987073

Intron Length:

473

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGGCTG

5'SS Class:

major

3'SS Sequence:

TTTTTCTTGACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTTAC

U12 Branch Point Sequence:

TTTTTCTTGACA

Flanking Amino Acid:

RMLAHTPQQKGWPMYAQLLI

Intron Amino Acid Position:

2020

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

62.1

43.8

Major BPS

66.4

0.41

37.6

Major PPT

86.3

0.82

0.9

Minor 5ss

-1.7

3.3

46.2

49.1

Minor BPS

85.2

1.1

0.9

90.04

24.3

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976