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Intron Name: Anas_platyrhynchos_platyrhynchos_12_8987634_8988921_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8987634 - 8988921

Intron Length:

1288

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTTCTCTTAACA

Flanking Amino Acid:

LPDPFTPNLKVDMLSEINIA

Intron Amino Acid Position:

2112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

84.4

0.77

0.8

81.1

29.4

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

1.06

88.68

27.3

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976

ENSAPLT00000039455

8939719 - 8992037

52319