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Intron Name: Anas_platyrhynchos_platyrhynchos_12_8990306_8990678_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8990306 - 8990678

Intron Length:

373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTGG

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

GTAAGCAAAACC

Flanking Amino Acid:

QNLAVDLDTEGRYLFLNAIA

Intron Amino Acid Position:

2222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.8

42.7

Major BPS

71.2

0.53

37.5

Major PPT

82.1

0.72

0.7

76.6

25.4

Minor 5ss

37.8

-1.4

46.8

48.5

Minor BPS

41.9

-0.6

2.2

53.93

43.2

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976