Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8990812_8990896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8990812 - 8990896

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGGAT

U12 Branch Point Sequence:

TGTTTTTGGATT

Flanking Amino Acid:

NTEAIQEQITRVLLERLIVN

Intron Amino Acid Position:

2266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

65.9

40.1

Major BPS

71.4

0.53

1.4

71.4

45.1

Major PPT

79.8

0.67

70.4

44.5

Minor 5ss

24.4

-2.9

3.1

29.4

43.3

Minor BPS

58.5

0.35

1.4

75.48

35.4

Associated Gene:

Gene:

CNOT1

Ensembl Gene ID:

ENSAPLG00000007162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039455

8939719 - 8992037

52319

ENSAPLT00000021365

8934191 - 8991694

57504

ENSAPLT00000007513

8939719 - 8991694

51976