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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8997956_8998159_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8997956 - 8998159
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
GCTCCGTGCATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTCTCTGTCATC
Flanking Amino Acid:
TCGIRGLLRDAQDALQSQSG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
58.7
0.2
1
52.5
36.8
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
47.4
-0.2
2.3
65.01
41.9

Associated Gene:

Gene:
SETD6
Ensembl Gene ID:
ENSAPLG00000007404
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007690
8994569 - 8999204
4636